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Sample GSM1495909 Query DataSets for GSM1495909
Status Public on Nov 01, 2014
Title CP152-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus papilloma
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP152-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.675374422
cg00000108 0.978369841
cg00000109 0.940776173
cg00000165 0.177156403
cg00000236 0.916444843
cg00000289 0.574606529
cg00000292 0.874662901
cg00000321 0.494178283
cg00000363 0.100475072
cg00000622 0.018411968
cg00000658 0.929225266
cg00000714 0.068700484
cg00000721 0.98549005
cg00000734 0.072539706
cg00000769 0.063039909
cg00000807 0.899036365
cg00000884 0.937094818
cg00000905 0.099549521
cg00000924 0.661205403
cg00000948 0.972555644

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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