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Sample GSM1495908 Query DataSets for GSM1495908
Status Public on Nov 01, 2014
Title CP157-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: mut
tumor type: choroid plexus carcinomas
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP157-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.085845982
cg00000108 0.982279058
cg00000109 0.94938775
cg00000165 0.664475869
cg00000236 0.935202566
cg00000289 0.642809548
cg00000292 0.817497502
cg00000321 0.865778085
cg00000363 0.123195781
cg00000622 0.020840692
cg00000658 0.92422818
cg00000714 0.021416036
cg00000721 0.974998477
cg00000734 0.052733982
cg00000769 0.078046288
cg00000807 0.918597062
cg00000884 0.860331614
cg00000905 0.080835219
cg00000924 0.661928603
cg00000948 0.956213342

Total number of rows: 483949

Table truncated, full table size 10828 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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