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Sample GSM1495907 Query DataSets for GSM1495907
Status Public on Nov 01, 2014
Title CP53-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus papilloma
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP53-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.63840307
cg00000108 0.991845446
cg00000109 0.899541349
cg00000165 0.343671304
cg00000236 0.948525954
cg00000289 0.598569211
cg00000292 0.924680816
cg00000321 0.554837431
cg00000363 0.101977122
cg00000622 0.022487411
cg00000658 0.861161446
cg00000714 0.044757549
cg00000721 0.967958436
cg00000734 0.047665637
cg00000769 0.076866657
cg00000807 0.945146408
cg00000884 0.963261251
cg00000905 0.063424826
cg00000924 0.626191167
cg00000948 0.96838519

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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