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Sample GSM1495906 Query DataSets for GSM1495906
Status Public on Nov 01, 2014
Title CP50-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: mut
tumor type: choroid plexus carcinomas
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP50-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.455149977
cg00000108 0.981701672
cg00000109 0.93681425
cg00000165 0.945261408
cg00000236 0.933722109
cg00000289 0.733050388
cg00000292 0.484477048
cg00000321 0.168995435
cg00000363 0.115345718
cg00000622 0.01492333
cg00000658 0.950015842
cg00000714 0.093055677
cg00000721 0.975568947
cg00000734 0.045527017
cg00000769 0.065638917
cg00000807 0.914071847
cg00000884 0.95854925
cg00000905 0.023754084
cg00000924 0.333298217
cg00000948 0.934957308

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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