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Sample GSM1495904 Query DataSets for GSM1495904
Status Public on Nov 01, 2014
Title CP143-TB
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: mut
tumor type: choroid plexus carcinomas
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP143-TB
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.445992766
cg00000108 0.981614604
cg00000109 0.976391286
cg00000165 0.270625562
cg00000236 0.934183715
cg00000289 0.613244655
cg00000292 0.788969085
cg00000321 0.6086047
cg00000363 0.300203184
cg00000622 0.020836412
cg00000658 0.935814774
cg00000714 0.092839697
cg00000721 0.994352536
cg00000734 0.053238068
cg00000769 0.072996983
cg00000807 0.786016881
cg00000884 0.896309252
cg00000905 0.031290628
cg00000924 0.50403777
cg00000948 0.977426924

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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