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Sample GSM1495903 Query DataSets for GSM1495903
Status Public on Nov 01, 2014
Title CP111-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus papilloma
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP111-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.849441653
cg00000108 0.977621656
cg00000109 0.933156624
cg00000165 0.881738691
cg00000236 0.933664206
cg00000289 0.508304963
cg00000292 0.954195528
cg00000321 0.076979653
cg00000363 0.127562582
cg00000622 0.023679975
cg00000658 0.863255692
cg00000714 0.05931312
cg00000721 0.966398751
cg00000734 0.053730647
cg00000769 0.066061737
cg00000807 0.965540054
cg00000884 0.924755067
cg00000905 0.053953011
cg00000924 0.62146966
cg00000948 0.971949524

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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