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Sample GSM1495902 Query DataSets for GSM1495902
Status Public on Nov 01, 2014
Title CP112-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus carcinomas
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP112-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.433013604
cg00000108 0.980204073
cg00000109 0.925175718
cg00000165 0.854760429
cg00000236 0.943506582
cg00000289 0.641530575
cg00000292 0.925743539
cg00000321 0.538565872
cg00000363 0.084476016
cg00000622 0.027473271
cg00000658 0.880290286
cg00000714 0.035148511
cg00000721 0.960691462
cg00000734 0.026539926
cg00000769 0.067132269
cg00000807 0.877658367
cg00000884 0.929432407
cg00000905 0.04799838
cg00000924 0.627941423
cg00000948 0.965419828

Total number of rows: 483949

Table truncated, full table size 10826 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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