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Sample GSM1495901 Query DataSets for GSM1495901
Status Public on Nov 01, 2014
Title CP47-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus papilloma
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP47-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.832916747
cg00000108 0.994487756
cg00000109 0.829972383
cg00000165 0.179353259
cg00000236 0.833745858
cg00000289 0.547729658
cg00000292 0.931322318
cg00000321 0.421843599
cg00000363 0.185758836
cg00000622 0.012639973
cg00000658 0.900337626
cg00000714 0.071700489
cg00000721 0.965828823
cg00000734 0.045348313
cg00000769 0.070001116
cg00000807 0.712507941
cg00000884 0.921033074
cg00000905 0.088273145
cg00000924 0.627221606
cg00000948 0.962174774

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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