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Sample GSM1495900 Query DataSets for GSM1495900
Status Public on Nov 01, 2014
Title CP59-T
Sample type genomic
Source name brain tumor
Organism Homo sapiens
Characteristics p53 status: wt
tumor type: choroid plexus carcinomas
Treatment protocol Tumor samples were snap frozen in liquid nitrogen upon resection and stored at -80 oC until DNA extraction.
Growth protocol DNA was isolated from fresh-frozen tumor soon after tumor resection
Extracted molecule genomic DNA
Extraction protocol DNA from choroid plexus tumor (CPT) tissue was obtained by proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Standard Illumina protocol (Biotin/DNP)
Hybridization protocol standard Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol.
Description CP59-T
Data processing Normalization of raw intensities was conducted with the BMIQ algorithm. Filtering was conducted for probes whose detection p-values were over 0.01, probes containing a SNP, and all probes mapping to the X and Y chromosomes.
Submission date Sep 03, 2014
Last update date Nov 01, 2014
Contact name Diana M Merino
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Malkin
Street address 686 Bay St.
City Toronto
State/province Ontario
ZIP/Postal code M5V0A4
Country Canada
Platform ID GPL13534
Series (1)
GSE61044 Methylation analysis of choroid plexus tumors

Data table header descriptions
VALUE Average beta

Data table
cg00000029 0.321405894
cg00000108 0.959084471
cg00000109 0.926139225
cg00000165 0.881608715
cg00000236 0.931608869
cg00000289 0.479663396
cg00000292 0.458855685
cg00000321 0.818994018
cg00000363 0.760520298
cg00000622 0.016376812
cg00000658 0.88550244
cg00000714 0.052938099
cg00000721 0.954593654
cg00000734 0.054946686
cg00000769 0.067662892
cg00000807 0.886037804
cg00000884 0.934113718
cg00000905 0.038168452
cg00000924 0.600127864
cg00000948 0.950552426

Total number of rows: 483949

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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