|
Status |
Public on Sep 10, 2014 |
Title |
C3651_iPSC |
Sample type |
SRA |
|
|
Source name |
induced pluripotent stem cell line
|
Organism |
Pan troglodytes |
Characteristics |
cell line: induced pluripotent stem cell line passage: 12+4 gender: Female
|
Treatment protocol |
n/a
|
Growth protocol |
Standard iPSC and precursor cell line conditions as described in text
|
Extracted molecule |
polyA RNA |
Extraction protocol |
Qiagen Rneasy TruSeq
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2500 |
|
|
Description |
Sample 3
|
Data processing |
Mapping with TopHat2/Bowtie2 Removal of reads that do not map to highly orthologous regions between human and chimpanzee with featureCounts Loess normalization on log2 CPM using voom RPKM calculation Genome_build: PanTro3 Supplementary_files_format_and_content: Processed data .txt file reports RPKMs
|
|
|
Submission date |
Sep 02, 2014 |
Last update date |
May 15, 2019 |
Contact name |
Irene Gallego Romero |
E-mail(s) |
ireneg@uchicago.edu
|
Phone |
773 834 1984
|
Organization name |
University of Chicago
|
Department |
Human Genetics
|
Lab |
Gilad
|
Street address |
920 E 58th St, CLSC 317
|
City |
Chicago |
State/province |
IL |
ZIP/Postal code |
60637 |
Country |
USA |
|
|
Platform ID |
GPL19148 |
Series (2) |
GSE60996 |
Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics (RNA-Seq) |
GSE61343 |
Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics |
|
Relations |
BioSample |
SAMN03015241 |
SRA |
SRX690943 |