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Sample GSM1495395 Query DataSets for GSM1495395
Status Public on Sep 10, 2014
Title C3651_iPSC
Sample type SRA
 
Source name induced pluripotent stem cell line
Organism Pan troglodytes
Characteristics cell line: induced pluripotent stem cell line
passage: 12+4
gender: Female
Treatment protocol n/a
Growth protocol Standard iPSC and precursor cell line conditions as described in text
Extracted molecule polyA RNA
Extraction protocol Qiagen Rneasy
TruSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Description Sample 3
Data processing Mapping with TopHat2/Bowtie2
Removal of reads that do not map to highly orthologous regions between human and chimpanzee with featureCounts
Loess normalization on log2 CPM using voom
RPKM calculation
Genome_build: PanTro3
Supplementary_files_format_and_content: Processed data .txt file reports RPKMs
 
Submission date Sep 02, 2014
Last update date May 15, 2019
Contact name Irene Gallego Romero
E-mail(s) ireneg@uchicago.edu
Phone 773 834 1984
Organization name University of Chicago
Department Human Genetics
Lab Gilad
Street address 920 E 58th St, CLSC 317
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platform ID GPL19148
Series (2)
GSE60996 Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics (RNA-Seq)
GSE61343 Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics
Relations
BioSample SAMN03015241
SRA SRX690943

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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