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Sample GSM1494440 Query DataSets for GSM1494440
Status Public on Feb 12, 2015
Title HeLa_Input_(20140605_1,6)
Sample type SRA
Source name HeLa input
Organism Homo sapiens
Characteristics cell: nuclei
cell type: Epithelial carcinoma
cell line: HeLa
chip antibody: None
Extracted molecule genomic DNA
Extraction protocol The HeLa cell line was grown in DMEM media using strandard protocols. Input DNA was prepared from cross-linked cells as described previously (PMID:24737864).
Library strategy MNase-Seq
Library source genomic
Library selection MNase
Instrument model Illumina HiSeq 2500
Description HeLa cross-linked (X-ChIP) input
Data processing Paired reads were merged using SeqPrep ( with parameters -q 30 (quality) and -L 25 (minimum merged pair length). SeqPrep also removed adaptors and low-quality reads.
Submission date Aug 29, 2014
Last update date May 15, 2019
Contact name Jorja Henikoff
Phone 206-667-4850
Organization name Fred Hutchinson Cancer Research Center
Department Basic Sciences
Lab Henikoff
Street address 1100 Fairview AV N, A1-162
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
Platform ID GPL16791
Series (1)
GSE60951 A unique chromatin complex occupies young alpha-satellite arrays of human centromeres
BioSample SAMN03013866
SRA SRX690218

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data not provided for this record

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