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Sample GSM1493703 Query DataSets for GSM1493703
Status Public on Jun 29, 2016
Title HDF-TIG120
Sample type genomic
 
Source name Parental lines of human iPSC lines
Organism Homo sapiens
Characteristics cell type: human dermal fibroblasts
Extracted molecule genomic DNA
Extraction protocol GenomicDNA lysates were extracted with DNeasy(R) blood and tissue kit (QIAgen) in accordance with manufacture's protocol.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina protocol
Scan protocol Standard recommended Illumina scanner setting protocol using BeadArray Reader
Description SAMPLE 2
Data processing Illumina GenomeStudio software Unmethylated(Signal_A) and methylated(Signal_B) signal intensities
 
Submission date Aug 29, 2014
Last update date Jun 29, 2016
Contact name Yoshinori Yoshida
E-mail(s) yoshinor@cira.kyoto-u.ac.jp
Organization name Kyoto University
Street address 53, Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 6068507
Country Japan
 
Platform ID GPL13534
Series (2)
GSE60923 Reprogramming-associated aberrant DNA methylation determines hematopoietic differentiation capacity of human induced pluripotent stem cells [parental_lines_methylation]
GSE60924 Reprogramming-associated aberrant DNA methylation determines hematopoietic differentiation capacity of human induced pluripotent stem cells

Data table header descriptions
ID_REF
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.3195351 0
cg00000108 0.9002635 0
cg00000109 0.5961854 0
cg00000165 0.1921922 0
cg00000236 0.8589297 0
cg00000289 0.7887789 0
cg00000292 0.6644403 0
cg00000321 0.1205659 0
cg00000363 0.2323545 0
cg00000622 0.02423113 0
cg00000658 0.7987421 0
cg00000714 0.115565 0
cg00000721 0.913095 0
cg00000734 0.09577695 0
cg00000769 0.0822892 0
cg00000807 0.8463801 0
cg00000884 0.7235857 0
cg00000905 0.1368788 0
cg00000924 0.4886142 0
cg00000948 0.8577845 0

Total number of rows: 485577

Table truncated, full table size 10975 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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