NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1489426 Query DataSets for GSM1489426
Status Public on Jun 29, 2016
Title 253G4
Sample type genomic
 
Source name human induced pluripotent stem cells
Organism Homo sapiens
Characteristics cell type: human induced pluripotent stem cells
Growth protocol Human pluripotent stem cells were culture on mitomycin C-treated SNL feeder cells in Primate ES cell medium (ReproCELL) containing 4 ng/mL recombinant bFGF (Wako)
Extracted molecule genomic DNA
Extraction protocol GenomicDNA lysates were extracted with DNeasy(R) blood and tissue kit (QIAgen) in accordance with manufacture's protocol.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina protocol
Scan protocol Standard recommended Illumina scanner setting protocol using BeadArray Reader
Description human induced pluripotent stem cells derived from dermal fibroblast
SAMPLE 5
Data processing Illumina GenomeStudio software and GeneSpring (Agilent Techonologies) Unmethylated(Signal_A) and methylated(Signal_B) signal intensities
 
Submission date Aug 27, 2014
Last update date Jun 29, 2016
Contact name Yoshinori Yoshida
E-mail(s) yoshinor@cira.kyoto-u.ac.jp
Organization name Kyoto University
Street address 53, Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 6068507
Country Japan
 
Platform ID GPL13534
Series (2)
GSE60821 Reprogramming-associated aberrant DNA methylation determines hematopoietic differentiation capacity of human induced pluripotent stem cells [undiff_iPSESCs_methylation]
GSE60924 Reprogramming-associated aberrant DNA methylation determines hematopoietic differentiation capacity of human induced pluripotent stem cells

Data table header descriptions
ID_REF
VALUE Average Beta normalized by quantile normalization
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.76450247 0
cg00000108 0.9290207 0
cg00000109 0.8390865 0
cg00000165 0.13165422 0
cg00000236 0.76092166 0
cg00000289 0.67343974 0
cg00000292 0.8728967 0
cg00000321 0.21436892 0
cg00000363 0.14770298 0
cg00000622 0.014632042 0
cg00000658 0.72921246 0
cg00000714 0.3293535 0
cg00000721 0.8442504 0
cg00000734 0.08721571 0
cg00000769 0.06767371 0
cg00000807 0.7437281 0
cg00000884 0.78825164 0
cg00000905 0.2382235 0
cg00000924 0.5031308 0
cg00000948 0.825509 0

Total number of rows: 485576

Table truncated, full table size 11235 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap