NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1467394 Query DataSets for GSM1467394
Status Public on Aug 08, 2014
Title DLPFC_Control_93
Sample type RNA
 
Source name DLPFC
Organism Homo sapiens
Characteristics rin: 8.4
ocd: Control
rinmatched: 0
dx: Control
ph: 6.56
age: 34.961643
pmi: 9
Sex: M
race: CAUC
batch1: 95
Treatment protocol Total RNA was extracted from dissected frozen postmortem human brain tissue.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from ~ 100 mg of tissue using the RNeasy Kit (Qiagen) according to manufacturer’s protocol.
Label biotin
Label protocol Refer to the Illumina DASL Assay System Manual
 
Hybridization protocol Refer to the Illumina DASL Assay System Manual
Scan protocol Refer to the Illumina DASL Assay System Manual
Description 5591989044_I
R4303
Data processing The raw intensities were exported from GenomeStudio and read into R using the lumi package. Background correction (bgAdjust.affy option), variance stabilizing transform, and quantile normalization were then performed to normalize the data.
 
Submission date Aug 07, 2014
Last update date Aug 08, 2014
Contact name Andrew Jaffe
E-mail(s) andrew.jaffe@libd.org
Phone 1-443-287-6864
Organization name Lieber Institute for Brain Development
Department Clinical Sciences
Street address 855 N Wolfe St, Ste 300
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL6947
Series (1)
GSE60190 Genetic Neuropathology of Obsessive Psychiatric Syndromes

Data table header descriptions
ID_REF
VALUE normalized signal
R4303_detectionP

Data table
ID_REF VALUE R4303_detectionP
ILMN_1762337 7.390145982 0.59816
ILMN_2055271 7.488698706 0.03953
ILMN_1736007 7.406692262 0.27404
ILMN_2383229 7.388930061 0.6469
ILMN_1806310 7.437485842 0.09618
ILMN_1779670 7.424934745 0.14493
ILMN_2321282 7.419549358 0.17787
ILMN_1671474 7.403875902 0.30698
ILMN_1772582 7.399925623 0.37286
ILMN_1735698 7.396492762 0.43742
ILMN_1653355 7.534063405 0.0224
ILMN_1717783 7.379785548 0.95652
ILMN_1705025 7.416777794 0.18577
ILMN_1814316 9.345539261 0
ILMN_2359168 9.394272116 0
ILMN_1731507 7.807012245 0.00264
ILMN_1787689 7.439889684 0.09223
ILMN_1745607 8.744789939 0
ILMN_2136495 7.402861062 0.32938
ILMN_1668111 7.387876804 0.69302

Total number of rows: 48679

Table truncated, full table size 1519 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap