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Sample GSM1467387 Query DataSets for GSM1467387
Status Public on Aug 08, 2014
Title DLPFC_Control_86
Sample type RNA
 
Source name DLPFC
Organism Homo sapiens
Characteristics rin: 7.2
ocd: Control
rinmatched: 1
dx: Control
ph: 6.36
age: 52.523287
pmi: 23
Sex: M
race: CAUC
batch1: 92
Treatment protocol Total RNA was extracted from dissected frozen postmortem human brain tissue.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from ~ 100 mg of tissue using the RNeasy Kit (Qiagen) according to manufacturer’s protocol.
Label biotin
Label protocol Refer to the Illumina DASL Assay System Manual
 
Hybridization protocol Refer to the Illumina DASL Assay System Manual
Scan protocol Refer to the Illumina DASL Assay System Manual
Description 5630132024_G
R4070
Data processing The raw intensities were exported from GenomeStudio and read into R using the lumi package. Background correction (bgAdjust.affy option), variance stabilizing transform, and quantile normalization were then performed to normalize the data.
 
Submission date Aug 07, 2014
Last update date Aug 08, 2014
Contact name Andrew Jaffe
E-mail(s) andrew.jaffe@libd.org
Phone 1-443-287-6864
Organization name Lieber Institute for Brain Development
Department Clinical Sciences
Street address 855 N Wolfe St, Ste 300
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL6947
Series (1)
GSE60190 Genetic Neuropathology of Obsessive Psychiatric Syndromes

Data table header descriptions
ID_REF
VALUE normalized signal
R4070_detectionP

Data table
ID_REF VALUE R4070_detectionP
ILMN_1762337 7.386597532 0.76812
ILMN_2055271 7.541225523 0.01713
ILMN_1736007 7.393835876 0.5415
ILMN_2383229 7.400046362 0.38076
ILMN_1806310 7.41468226 0.22134
ILMN_1779670 7.408452525 0.27141
ILMN_2321282 7.411571987 0.23847
ILMN_1671474 7.408307403 0.27273
ILMN_1772582 7.382835897 0.89065
ILMN_1735698 7.389922245 0.639
ILMN_1653355 7.511203312 0.02635
ILMN_1717783 7.38564697 0.80237
ILMN_1705025 7.385718337 0.80105
ILMN_1814316 9.351806482 0
ILMN_2359168 9.148341162 0
ILMN_1731507 7.85534491 0.00395
ILMN_1787689 7.434421108 0.11331
ILMN_1745607 8.898503478 0
ILMN_2136495 7.400403041 0.37286
ILMN_1668111 7.384373068 0.85244

Total number of rows: 48679

Table truncated, full table size 1513 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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