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Sample GSM1467382 Query DataSets for GSM1467382
Status Public on Aug 08, 2014
Title DLPFC_Control_82
Sample type RNA
 
Source name DLPFC
Organism Homo sapiens
Characteristics rin: 8.2
ocd: Control
rinmatched: 0
dx: Control
ph: 6.79
age: 17.09041
pmi: 12
Sex: F
race: CAUC
batch1: 86
Treatment protocol Total RNA was extracted from dissected frozen postmortem human brain tissue.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from ~ 100 mg of tissue using the RNeasy Kit (Qiagen) according to manufacturer’s protocol.
Label biotin
Label protocol Refer to the Illumina DASL Assay System Manual
 
Hybridization protocol Refer to the Illumina DASL Assay System Manual
Scan protocol Refer to the Illumina DASL Assay System Manual
Description 5630132023_A
R3522
Data processing The raw intensities were exported from GenomeStudio and read into R using the lumi package. Background correction (bgAdjust.affy option), variance stabilizing transform, and quantile normalization were then performed to normalize the data.
 
Submission date Aug 07, 2014
Last update date Aug 08, 2014
Contact name Andrew Jaffe
E-mail(s) andrew.jaffe@libd.org
Phone 1-443-287-6864
Organization name Lieber Institute for Brain Development
Department Clinical Sciences
Street address 855 N Wolfe St, Ste 300
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL6947
Series (1)
GSE60190 Genetic Neuropathology of Obsessive Psychiatric Syndromes

Data table header descriptions
ID_REF
VALUE normalized signal
R3522_detectionP

Data table
ID_REF VALUE R3522_detectionP
ILMN_1762337 7.395879306 0.50198
ILMN_2055271 7.430238726 0.13439
ILMN_1736007 7.409239119 0.278
ILMN_2383229 7.41599749 0.21871
ILMN_1806310 7.417365571 0.20553
ILMN_1779670 7.429704789 0.1357
ILMN_2321282 7.385320796 0.81818
ILMN_1671474 7.383918205 0.8643
ILMN_1772582 7.392014488 0.60606
ILMN_1735698 7.396456095 0.49012
ILMN_1653355 7.495925179 0.03557
ILMN_1717783 7.403866005 0.34914
ILMN_1705025 7.399097582 0.43478
ILMN_1814316 9.055928154 0
ILMN_2359168 9.112744919 0
ILMN_1731507 7.606749515 0.01054
ILMN_1787689 7.443560307 0.09881
ILMN_1745607 9.182636243 0
ILMN_2136495 7.388472624 0.71937
ILMN_1668111 7.378663087 0.97365

Total number of rows: 48679

Table truncated, full table size 1521 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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