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Sample GSM1467379 Query DataSets for GSM1467379
Status Public on Aug 08, 2014
Title DLPFC_Control_79
Sample type RNA
 
Source name DLPFC
Organism Homo sapiens
Characteristics rin: 8.3
ocd: Control
rinmatched: 0
dx: Control
ph: 6.8
age: 67.865753
pmi: 21
Sex: M
race: CAUC
batch1: 91
Treatment protocol Total RNA was extracted from dissected frozen postmortem human brain tissue.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from ~ 100 mg of tissue using the RNeasy Kit (Qiagen) according to manufacturer’s protocol.
Label biotin
Label protocol Refer to the Illumina DASL Assay System Manual
 
Hybridization protocol Refer to the Illumina DASL Assay System Manual
Scan protocol Refer to the Illumina DASL Assay System Manual
Description 5630132009_H
R4038
Data processing The raw intensities were exported from GenomeStudio and read into R using the lumi package. Background correction (bgAdjust.affy option), variance stabilizing transform, and quantile normalization were then performed to normalize the data.
 
Submission date Aug 07, 2014
Last update date Aug 08, 2014
Contact name Andrew Jaffe
E-mail(s) andrew.jaffe@libd.org
Phone 1-443-287-6864
Organization name Lieber Institute for Brain Development
Department Clinical Sciences
Street address 855 N Wolfe St, Ste 300
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL6947
Series (1)
GSE60190 Genetic Neuropathology of Obsessive Psychiatric Syndromes

Data table header descriptions
ID_REF
VALUE normalized signal
R4038_detectionP

Data table
ID_REF VALUE R4038_detectionP
ILMN_1762337 7.385647756 0.80237
ILMN_2055271 7.443415461 0.10804
ILMN_1736007 7.406046802 0.28854
ILMN_2383229 7.385173235 0.81291
ILMN_1806310 7.405052322 0.29513
ILMN_1779670 7.426117982 0.15679
ILMN_2321282 7.413448745 0.2108
ILMN_1671474 7.393571437 0.55072
ILMN_1772582 7.411777999 0.22398
ILMN_1735698 7.380702617 0.93676
ILMN_1653355 7.561720361 0.01581
ILMN_1717783 7.386105821 0.78656
ILMN_1705025 7.403317429 0.31489
ILMN_1814316 9.198385079 0
ILMN_2359168 9.135791294 0
ILMN_1731507 7.739432557 0.00527
ILMN_1787689 7.43806411 0.11858
ILMN_1745607 8.654680154 0
ILMN_2136495 7.391430763 0.62846
ILMN_1668111 7.391246623 0.62846

Total number of rows: 48679

Table truncated, full table size 1518 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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