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Sample GSM1467376 Query DataSets for GSM1467376
Status Public on Aug 08, 2014
Title DLPFC_Control_78
Sample type RNA
 
Source name DLPFC
Organism Homo sapiens
Characteristics rin: 7.7
ocd: Control
rinmatched: 1
dx: Control
ph: 6.3
age: 63.558904
pmi: 20
Sex: M
race: CAUC
batch1: 79
Treatment protocol Total RNA was extracted from dissected frozen postmortem human brain tissue.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from ~ 100 mg of tissue using the RNeasy Kit (Qiagen) according to manufacturer’s protocol.
Label biotin
Label protocol Refer to the Illumina DASL Assay System Manual
 
Hybridization protocol Refer to the Illumina DASL Assay System Manual
Scan protocol Refer to the Illumina DASL Assay System Manual
Description 5591989008_K
R4424
Data processing The raw intensities were exported from GenomeStudio and read into R using the lumi package. Background correction (bgAdjust.affy option), variance stabilizing transform, and quantile normalization were then performed to normalize the data.
 
Submission date Aug 07, 2014
Last update date Aug 08, 2014
Contact name Andrew Jaffe
E-mail(s) andrew.jaffe@libd.org
Phone 1-443-287-6864
Organization name Lieber Institute for Brain Development
Department Clinical Sciences
Street address 855 N Wolfe St, Ste 300
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL6947
Series (1)
GSE60190 Genetic Neuropathology of Obsessive Psychiatric Syndromes

Data table header descriptions
ID_REF
VALUE normalized signal
R4424_detectionP

Data table
ID_REF VALUE R4424_detectionP
ILMN_1762337 7.38467931 0.83267
ILMN_2055271 7.449621879 0.08564
ILMN_1736007 7.405760992 0.30303
ILMN_2383229 7.383961142 0.85244
ILMN_1806310 7.397649061 0.43742
ILMN_1779670 7.409348048 0.25955
ILMN_2321282 7.391541783 0.60474
ILMN_1671474 7.39313312 0.5415
ILMN_1772582 7.399861259 0.3913
ILMN_1735698 7.404017107 0.32148
ILMN_1653355 7.604427091 0.01186
ILMN_1717783 7.386075052 0.78129
ILMN_1705025 7.392702977 0.55599
ILMN_1814316 9.54922222 0
ILMN_2359168 9.472776216 0
ILMN_1731507 9.020122193 0
ILMN_1787689 7.447435055 0.08696
ILMN_1745607 9.87135684 0
ILMN_2136495 7.392776149 0.55468
ILMN_1668111 7.377231491 0.98551

Total number of rows: 48679

Table truncated, full table size 1511 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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