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Sample GSM1467359 Query DataSets for GSM1467359
Status Public on Aug 08, 2014
Title DLPFC_OCD_11
Sample type RNA
 
Source name DLPFC
Organism Homo sapiens
Characteristics rin: 7.8
ocd: OCD
rinmatched: 1
dx: MDD
ph: 6.7
age: 52.038356
pmi: 16
Sex: M
race: CAUC
batch1: 74
Treatment protocol Total RNA was extracted from dissected frozen postmortem human brain tissue.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from ~ 100 mg of tissue using the RNeasy Kit (Qiagen) according to manufacturer’s protocol.
Label biotin
Label protocol Refer to the Illumina DASL Assay System Manual
 
Hybridization protocol Refer to the Illumina DASL Assay System Manual
Scan protocol Refer to the Illumina DASL Assay System Manual
Description 5591989061_E
R5695
Data processing The raw intensities were exported from GenomeStudio and read into R using the lumi package. Background correction (bgAdjust.affy option), variance stabilizing transform, and quantile normalization were then performed to normalize the data.
 
Submission date Aug 07, 2014
Last update date Aug 08, 2014
Contact name Andrew Jaffe
E-mail(s) andrew.jaffe@libd.org
Phone 1-443-287-6864
Organization name Lieber Institute for Brain Development
Department Clinical Sciences
Street address 855 N Wolfe St, Ste 300
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL6947
Series (1)
GSE60190 Genetic Neuropathology of Obsessive Psychiatric Syndromes

Data table header descriptions
ID_REF
VALUE normalized signal
R5695_detectionP

Data table
ID_REF VALUE R5695_detectionP
ILMN_1762337 7.396677229 0.46113
ILMN_2055271 7.438813423 0.11199
ILMN_1736007 7.4264461 0.15415
ILMN_2383229 7.389327129 0.68775
ILMN_1806310 7.409046226 0.28063
ILMN_1779670 7.402186821 0.37022
ILMN_2321282 7.388375621 0.70883
ILMN_1671474 7.404917497 0.33465
ILMN_1772582 7.415216592 0.22398
ILMN_1735698 7.403128646 0.36232
ILMN_1653355 7.456998144 0.07115
ILMN_1717783 7.383214145 0.88801
ILMN_1705025 7.402338457 0.36891
ILMN_1814316 9.705042973 0
ILMN_2359168 9.587365699 0
ILMN_1731507 7.851739999 0.00264
ILMN_1787689 7.547236568 0.01976
ILMN_1745607 8.504358709 0
ILMN_2136495 7.432098455 0.13834
ILMN_1668111 7.389902339 0.66535

Total number of rows: 48679

Table truncated, full table size 1514 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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