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Sample GSM1467355 Query DataSets for GSM1467355
Status Public on Aug 08, 2014
Title DLPFC_Control_68
Sample type RNA
 
Source name DLPFC
Organism Homo sapiens
Characteristics rin: 6
ocd: Control
rinmatched: 0
dx: Control
ph: 6.11
age: 48.101369
pmi: 20
Sex: M
race: CAUC
batch1: 73
Treatment protocol Total RNA was extracted from dissected frozen postmortem human brain tissue.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from ~ 100 mg of tissue using the RNeasy Kit (Qiagen) according to manufacturer’s protocol.
Label biotin
Label protocol Refer to the Illumina DASL Assay System Manual
 
Hybridization protocol Refer to the Illumina DASL Assay System Manual
Scan protocol Refer to the Illumina DASL Assay System Manual
Description 5591989058_K
R5633
Data processing The raw intensities were exported from GenomeStudio and read into R using the lumi package. Background correction (bgAdjust.affy option), variance stabilizing transform, and quantile normalization were then performed to normalize the data.
 
Submission date Aug 07, 2014
Last update date Aug 08, 2014
Contact name Andrew Jaffe
E-mail(s) andrew.jaffe@libd.org
Phone 1-443-287-6864
Organization name Lieber Institute for Brain Development
Department Clinical Sciences
Street address 855 N Wolfe St, Ste 300
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL6947
Series (1)
GSE60190 Genetic Neuropathology of Obsessive Psychiatric Syndromes

Data table header descriptions
ID_REF
VALUE normalized signal
R5633_detectionP

Data table
ID_REF VALUE R5633_detectionP
ILMN_1762337 7.406037525 0.34914
ILMN_2055271 7.481296344 0.06192
ILMN_1736007 7.392525205 0.63636
ILMN_2383229 7.413097559 0.26877
ILMN_1806310 7.406580745 0.33992
ILMN_1779670 7.42180444 0.19895
ILMN_2321282 7.402865481 0.41107
ILMN_1671474 7.399296409 0.47167
ILMN_1772582 7.387183544 0.78524
ILMN_1735698 7.38839629 0.74967
ILMN_1653355 7.517466195 0.03821
ILMN_1717783 7.388970596 0.73386
ILMN_1705025 7.399296409 0.47167
ILMN_1814316 8.780701793 0
ILMN_2359168 8.679748956 0
ILMN_1731507 7.509841529 0.04348
ILMN_1787689 7.42160638 0.20158
ILMN_1745607 9.639490549 0
ILMN_2136495 7.632756727 0.00922
ILMN_1668111 7.380840498 0.96443

Total number of rows: 48679

Table truncated, full table size 1508 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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