NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1467351 Query DataSets for GSM1467351
Status Public on Aug 08, 2014
Title DLPFC_Control_66
Sample type RNA
 
Source name DLPFC
Organism Homo sapiens
Characteristics rin: 6.5
ocd: Control
rinmatched: 0
dx: Control
ph: 6.55
age: 83.545205
pmi: 32
Sex: M
race: CAUC
batch1: 71
Treatment protocol Total RNA was extracted from dissected frozen postmortem human brain tissue.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from ~ 100 mg of tissue using the RNeasy Kit (Qiagen) according to manufacturer’s protocol.
Label biotin
Label protocol Refer to the Illumina DASL Assay System Manual
 
Hybridization protocol Refer to the Illumina DASL Assay System Manual
Scan protocol Refer to the Illumina DASL Assay System Manual
Description 5591989050_I
R5599
Data processing The raw intensities were exported from GenomeStudio and read into R using the lumi package. Background correction (bgAdjust.affy option), variance stabilizing transform, and quantile normalization were then performed to normalize the data.
 
Submission date Aug 07, 2014
Last update date Aug 08, 2014
Contact name Andrew Jaffe
E-mail(s) andrew.jaffe@libd.org
Phone 1-443-287-6864
Organization name Lieber Institute for Brain Development
Department Clinical Sciences
Street address 855 N Wolfe St, Ste 300
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL6947
Series (1)
GSE60190 Genetic Neuropathology of Obsessive Psychiatric Syndromes

Data table header descriptions
ID_REF
VALUE normalized signal
R5599_detectionP

Data table
ID_REF VALUE R5599_detectionP
ILMN_1762337 7.398824024 0.44928
ILMN_2055271 7.535440711 0.05007
ILMN_1736007 7.390270084 0.64822
ILMN_2383229 7.38697802 0.78129
ILMN_1806310 7.439285111 0.1581
ILMN_1779670 7.502092587 0.06719
ILMN_2321282 7.406854991 0.32543
ILMN_1671474 7.390655715 0.64163
ILMN_1772582 7.411707073 0.28986
ILMN_1735698 7.399822717 0.43215
ILMN_1653355 7.713466257 0.01054
ILMN_1717783 7.375998887 0.99473
ILMN_1705025 7.388629027 0.71146
ILMN_1814316 8.814000983 0
ILMN_2359168 8.963174164 0
ILMN_1731507 7.472752419 0.09223
ILMN_1787689 7.464614145 0.10277
ILMN_1745607 9.345364233 0
ILMN_2136495 7.791760872 0.00395
ILMN_1668111 7.393133486 0.57971

Total number of rows: 48679

Table truncated, full table size 1495 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap