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Sample GSM1467347 Query DataSets for GSM1467347
Status Public on Aug 08, 2014
Title DLPFC_OCD_6
Sample type RNA
 
Source name DLPFC
Organism Homo sapiens
Characteristics rin: 8.8
ocd: OCD
rinmatched: 1
dx: Tics
ph: 6.7
age: 40.021917
pmi: 14.5
Sex: M
race: CAUC
batch1: 68
Treatment protocol Total RNA was extracted from dissected frozen postmortem human brain tissue.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from ~ 100 mg of tissue using the RNeasy Kit (Qiagen) according to manufacturer’s protocol.
Label biotin
Label protocol Refer to the Illumina DASL Assay System Manual
 
Hybridization protocol Refer to the Illumina DASL Assay System Manual
Scan protocol Refer to the Illumina DASL Assay System Manual
Description 5591989037_H
R4263
Data processing The raw intensities were exported from GenomeStudio and read into R using the lumi package. Background correction (bgAdjust.affy option), variance stabilizing transform, and quantile normalization were then performed to normalize the data.
 
Submission date Aug 07, 2014
Last update date Aug 08, 2014
Contact name Andrew Jaffe
E-mail(s) andrew.jaffe@libd.org
Phone 1-443-287-6864
Organization name Lieber Institute for Brain Development
Department Clinical Sciences
Street address 855 N Wolfe St, Ste 300
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL6947
Series (1)
GSE60190 Genetic Neuropathology of Obsessive Psychiatric Syndromes

Data table header descriptions
ID_REF
VALUE normalized signal
R4263_detectionP

Data table
ID_REF VALUE R4263_detectionP
ILMN_1762337 7.397975029 0.44664
ILMN_2055271 7.428767137 0.14625
ILMN_1736007 7.40926096 0.27536
ILMN_2383229 7.390032109 0.70356
ILMN_1806310 7.405462431 0.31884
ILMN_1779670 7.398369858 0.4361
ILMN_2321282 7.399487737 0.41107
ILMN_1671474 7.387865418 0.78129
ILMN_1772582 7.4050467 0.3307
ILMN_1735698 7.387865418 0.78261
ILMN_1653355 7.44380683 0.09223
ILMN_1717783 7.392546758 0.60343
ILMN_1705025 7.38593043 0.83663
ILMN_1814316 9.530907055 0
ILMN_2359168 9.620419903 0
ILMN_1731507 8.007644081 0.00132
ILMN_1787689 7.558817968 0.01845
ILMN_1745607 8.861614936 0
ILMN_2136495 7.381032035 0.95916
ILMN_1668111 7.383516828 0.91568

Total number of rows: 48679

Table truncated, full table size 1513 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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