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Sample GSM1467293 Query DataSets for GSM1467293
Status Public on Aug 08, 2014
Title DLPFC_Control_14
Sample type RNA
 
Source name DLPFC
Organism Homo sapiens
Characteristics rin: 8.5
ocd: Control
rinmatched: 0
dx: Control
ph: 6.59
age: 46.605479
pmi: 68
Sex: M
race: CAUC
batch1: 25
Treatment protocol Total RNA was extracted from dissected frozen postmortem human brain tissue.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from ~ 100 mg of tissue using the RNeasy Kit (Qiagen) according to manufacturer’s protocol.
Label biotin
Label protocol Refer to the Illumina DASL Assay System Manual
 
Hybridization protocol Refer to the Illumina DASL Assay System Manual
Scan protocol Refer to the Illumina DASL Assay System Manual
Description 4493594390_C
R2958
Data processing The raw intensities were exported from GenomeStudio and read into R using the lumi package. Background correction (bgAdjust.affy option), variance stabilizing transform, and quantile normalization were then performed to normalize the data.
 
Submission date Aug 07, 2014
Last update date Aug 08, 2014
Contact name Andrew Jaffe
E-mail(s) andrew.jaffe@libd.org
Phone 1-443-287-6864
Organization name Lieber Institute for Brain Development
Department Clinical Sciences
Street address 855 N Wolfe St, Ste 300
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL6947
Series (1)
GSE60190 Genetic Neuropathology of Obsessive Psychiatric Syndromes

Data table header descriptions
ID_REF
VALUE normalized signal
R2958_detectionP

Data table
ID_REF VALUE R2958_detectionP
ILMN_1762337 7.380510685 0.91173
ILMN_2055271 7.400501647 0.30171
ILMN_1736007 7.396227827 0.40975
ILMN_2383229 7.391637722 0.53887
ILMN_1806310 7.392761553 0.50329
ILMN_1779670 7.434558587 0.09618
ILMN_2321282 7.410587789 0.20026
ILMN_1671474 7.434558587 0.09618
ILMN_1772582 7.416012809 0.16206
ILMN_1735698 7.413708111 0.1805
ILMN_1653355 7.613710511 0.01186
ILMN_1717783 7.385244742 0.76548
ILMN_1705025 7.389359553 0.60738
ILMN_1814316 8.819491199 0
ILMN_2359168 8.879831328 0
ILMN_1731507 7.502197799 0.03689
ILMN_1787689 7.408941405 0.2108
ILMN_1745607 9.297671202 0
ILMN_2136495 7.394498982 0.45191
ILMN_1668111 7.3960175 0.41502

Total number of rows: 48679

Table truncated, full table size 1510 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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