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Sample GSM1467289 Query DataSets for GSM1467289
Status Public on Aug 08, 2014
Title DLPFC_Control_11
Sample type RNA
 
Source name DLPFC
Organism Homo sapiens
Characteristics rin: 8.5
ocd: Control
rinmatched: 0
dx: Control
ph: 6.29
age: 28.364383
pmi: 19
Sex: M
race: CAUC
batch1: 23
Treatment protocol Total RNA was extracted from dissected frozen postmortem human brain tissue.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from ~ 100 mg of tissue using the RNeasy Kit (Qiagen) according to manufacturer’s protocol.
Label biotin
Label protocol Refer to the Illumina DASL Assay System Manual
 
Hybridization protocol Refer to the Illumina DASL Assay System Manual
Scan protocol Refer to the Illumina DASL Assay System Manual
Description 4493594411_C
R3374
Data processing The raw intensities were exported from GenomeStudio and read into R using the lumi package. Background correction (bgAdjust.affy option), variance stabilizing transform, and quantile normalization were then performed to normalize the data.
 
Submission date Aug 07, 2014
Last update date Aug 08, 2014
Contact name Andrew Jaffe
E-mail(s) andrew.jaffe@libd.org
Phone 1-443-287-6864
Organization name Lieber Institute for Brain Development
Department Clinical Sciences
Street address 855 N Wolfe St, Ste 300
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL6947
Series (1)
GSE60190 Genetic Neuropathology of Obsessive Psychiatric Syndromes

Data table header descriptions
ID_REF
VALUE normalized signal
R3374_detectionP

Data table
ID_REF VALUE R3374_detectionP
ILMN_1762337 7.385313041 0.7668
ILMN_2055271 7.406923052 0.2253
ILMN_1736007 7.394149033 0.46113
ILMN_2383229 7.384547519 0.79315
ILMN_1806310 7.407737147 0.21871
ILMN_1779670 7.396310401 0.4058
ILMN_2321282 7.385826282 0.74704
ILMN_1671474 7.396310401 0.40448
ILMN_1772582 7.406146331 0.23847
ILMN_1735698 7.4248874 0.13307
ILMN_1653355 7.491122078 0.02372
ILMN_1717783 7.389248713 0.60738
ILMN_1705025 7.39324464 0.4888
ILMN_1814316 9.849922412 0
ILMN_2359168 9.701168526 0
ILMN_1731507 7.895306807 0.00264
ILMN_1787689 7.418857035 0.15679
ILMN_1745607 9.054517459 0
ILMN_2136495 7.387867321 0.67062
ILMN_1668111 7.39324464 0.4888

Total number of rows: 48679

Table truncated, full table size 1517 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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