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Sample GSM1467282 Query DataSets for GSM1467282
Status Public on Aug 08, 2014
Title DLPFC_Control_7
Sample type RNA
 
Source name DLPFC
Organism Homo sapiens
Characteristics rin: 8.1
ocd: Control
rinmatched: 0
dx: Control
ph: 6.27
age: 51.750684
pmi: 29
Sex: M
race: CAUC
batch1: 21
Treatment protocol Total RNA was extracted from dissected frozen postmortem human brain tissue.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from ~ 100 mg of tissue using the RNeasy Kit (Qiagen) according to manufacturer’s protocol.
Label biotin
Label protocol Refer to the Illumina DASL Assay System Manual
 
Hybridization protocol Refer to the Illumina DASL Assay System Manual
Scan protocol Refer to the Illumina DASL Assay System Manual
Description 4493594394_I
R3651
Data processing The raw intensities were exported from GenomeStudio and read into R using the lumi package. Background correction (bgAdjust.affy option), variance stabilizing transform, and quantile normalization were then performed to normalize the data.
 
Submission date Aug 07, 2014
Last update date Aug 08, 2014
Contact name Andrew Jaffe
E-mail(s) andrew.jaffe@libd.org
Phone 1-443-287-6864
Organization name Lieber Institute for Brain Development
Department Clinical Sciences
Street address 855 N Wolfe St, Ste 300
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL6947
Series (1)
GSE60190 Genetic Neuropathology of Obsessive Psychiatric Syndromes

Data table header descriptions
ID_REF
VALUE normalized signal
R3651_detectionP

Data table
ID_REF VALUE R3651_detectionP
ILMN_1762337 7.381276316 0.90382
ILMN_2055271 7.459135475 0.05665
ILMN_1736007 7.419255988 0.14756
ILMN_2383229 7.388776207 0.64163
ILMN_1806310 7.379728048 0.94598
ILMN_1779670 7.441635109 0.09091
ILMN_2321282 7.390538659 0.57444
ILMN_1671474 7.425055017 0.1278
ILMN_1772582 7.428021975 0.11989
ILMN_1735698 7.410436494 0.19763
ILMN_1653355 7.582457884 0.01581
ILMN_1717783 7.388222742 0.6693
ILMN_1705025 7.384672716 0.80764
ILMN_1814316 9.13202102 0
ILMN_2359168 9.15122839 0
ILMN_1731507 7.541545753 0.0224
ILMN_1787689 7.446019039 0.07642
ILMN_1745607 8.446773572 0
ILMN_2136495 7.527459735 0.0224
ILMN_1668111 7.386206386 0.74572

Total number of rows: 48679

Table truncated, full table size 1511 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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