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Sample GSM1467231 Query DataSets for GSM1467231
Status Public on Aug 08, 2014
Title GS0023275
Sample type genomic
 
Source name normal tissue
Organism Homo sapiens
Characteristics gender: Female
sample tissue: needle biopsy
disease state: normal
age: NA
Extracted molecule genomic DNA
Extraction protocol not provided
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description Illumina chip: 5808922033
Illumina position: R05C01
Data processing Touleimat and Tost, Epigenomics 2012
 
Submission date Aug 07, 2014
Last update date Aug 08, 2014
Contact name Thomas Fleischer
E-mail(s) thomas.fleischer@rr-research.no
Organization name Oslo University Hospital
Department Department of Cancer Genetics, Institute for Cancer Research
Street address Ullernchausséen 70
City Oslo
ZIP/Postal code 0310
Country Norway
 
Platform ID GPL13534
Series (1)
GSE60185 Genome-wide DNA methylation profiles in progression to in situ and invasive carcinoma of the breast with impact on gene transcription and prognosis

Data table header descriptions
ID_REF
VALUE Average Beta
pvalue

Data table
ID_REF VALUE pvalue
cg00000029 0.0807281871746527 0
cg00000108 0.96402710921635 0
cg00000109 0.841847537156018 0
cg00000165 0.156064630215818 0
cg00000236 0.878111122430992 0
cg00000289 0.53987303908637 0
cg00000321 0.218152427961697 0
cg00000363 0.0899544835050416 0
cg00000622 0.0188236575512548 0
cg00000658 0.893106801602999 0
cg00000714 0.0893808285881941 0
cg00000721 0.976641565981795 0
cg00000734 0.0416460102005957 0
cg00000769 0.138056161932105 0
cg00000807 0.840918809108952 0
cg00000884 0.932288504099609 0
cg00000905 0.0369402553312264 0
cg00000924 0.444775881768288 0
cg00000948 0.970390385315178 0
cg00000957 0.878109877802494 0

Total number of rows: 468424

Table truncated, full table size 14288 Kbytes.




Supplementary file Size Download File type/resource
GSM1467231_5808922033_R05C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1467231_5808922033_R05C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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