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Sample GSM1467178 Query DataSets for GSM1467178
Status Public on Aug 08, 2014
Title GS0005771
Sample type genomic
 
Source name breast cancer tissue
Organism Homo sapiens
Characteristics gender: Female
sample tissue: invasive
disease state: breast cancer
age: 72
Extracted molecule genomic DNA
Extraction protocol not provided
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description Illumina chip: 5808922065
Illumina position: R01C02
Data processing Touleimat and Tost, Epigenomics 2012
 
Submission date Aug 07, 2014
Last update date Aug 08, 2014
Contact name Thomas Fleischer
E-mail(s) thomas.fleischer@rr-research.no
Organization name Oslo University Hospital
Department Department of Cancer Genetics, Institute for Cancer Research
Street address Ullernchausséen 70
City Oslo
ZIP/Postal code 0310
Country Norway
 
Platform ID GPL13534
Series (1)
GSE60185 Genome-wide DNA methylation profiles in progression to in situ and invasive carcinoma of the breast with impact on gene transcription and prognosis

Data table header descriptions
ID_REF
VALUE Average Beta
pvalue

Data table
ID_REF VALUE pvalue
cg00000029 0.103349475349653 0
cg00000108 0.986051138218812 0
cg00000109 0.895923315875732 0
cg00000165 0.107859722524453 0
cg00000236 0.920246262014833 0
cg00000289 0.595509859002848 0
cg00000321 0.383123984204611 0
cg00000363 0.0873185641334259 0
cg00000622 0.014729238773338 0
cg00000658 0.741713598698271 0
cg00000714 0.0892746044572648 0
cg00000721 0.978491469988901 0
cg00000734 0.0321152683045396 0
cg00000769 0.0916252735225334 0
cg00000807 0.922674823453179 0
cg00000884 0.917177908669717 0
cg00000905 0.0368342199369751 0
cg00000924 0.373260261616266 0
cg00000948 0.969921646667774 0
cg00000957 0.886720455260281 0

Total number of rows: 468424

Table truncated, full table size 14280 Kbytes.




Supplementary file Size Download File type/resource
GSM1467178_5808922065_R01C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1467178_5808922065_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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