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Sample GSM1466943 Query DataSets for GSM1466943
Status Public on Aug 08, 2014
Title GS0005610
Sample type genomic
Source name breast cancer tissue
Organism Homo sapiens
Characteristics gender: Female
sample tissue: invasive
disease state: breast cancer
age: NA
Extracted molecule genomic DNA
Extraction protocol not provided
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description Illumina chip: 5808922018
Illumina position: R02C02
Data processing Touleimat and Tost, Epigenomics 2012
Submission date Aug 07, 2014
Last update date Aug 08, 2014
Contact name Thomas Fleischer
Organization name Oslo University Hospital
Department Department of Cancer Genetics, Institute for Cancer Research
Street address Ullernchausséen 70
City Oslo
ZIP/Postal code 0310
Country Norway
Platform ID GPL13534
Series (1)
GSE60185 Genome-wide DNA methylation profiles in progression to in situ and invasive carcinoma of the breast with impact on gene transcription and prognosis

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.211787689020937 0
cg00000108 0.967123643027233 0
cg00000109 0.929548580460095 0
cg00000165 0.205571194345682 0
cg00000236 0.965207508602188 0
cg00000289 0.670671902711967 0
cg00000321 0.286056248461306 0
cg00000363 0.190701282313475 0
cg00000622 0.0273323649044871 0
cg00000658 0.844487409542194 0
cg00000714 0.0916880174006344 0
cg00000721 0.981069807092841 0
cg00000734 0.0329333699676539 0
cg00000769 0.0601363194026283 0
cg00000807 0.826893221727498 0
cg00000884 0.932725240072959 0
cg00000905 0.0406582682606519 0
cg00000924 0.346635854048525 0
cg00000948 0.914500719250613 0
cg00000957 0.890827847687782 0

Total number of rows: 468424

Table truncated, full table size 14281 Kbytes.

Supplementary file Size Download File type/resource
GSM1466943_5808922018_R02C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1466943_5808922018_R02C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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