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Sample GSM1463177 Query DataSets for GSM1463177
Status Public on Aug 08, 2014
Title NK ATAC_seq
Sample type SRA
 
Source name NK Cells
Organism Mus musculus
Characteristics cell type: NK Cells
passages: In vivo FACS purified cells
strain: C57BL/6
chip antibody: N/A
Growth protocol Cells were sorted by FACS according to stablished markers
Extracted molecule genomic DNA
Extraction protocol pelleted by centrifugation
two sets of 9 cycles of PCR using indexing primers from Nextera kit
 
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina HiSeq 1500
 
Description ATAC-seq
Data processing Basecalls performed using CASAVA version 1.4
bowtie2 using default parameters
Using uniquely maped tag only
Genome_build: mm9
 
Submission date Jul 31, 2014
Last update date May 15, 2019
Contact name Ido Amit
E-mail(s) ido.amit@weizmann.ac.il
Phone 972-8-9343338
Organization name Weizmann Institute of Science
Department Immunology
Street address 234 Herzl st.
City Rehovot
ZIP/Postal code 760001
Country Israel
 
Platform ID GPL18480
Series (2)
GSE59992 Chromatin state dynamics during blood formation (ATAC-seq)
GSE60103 Chromatin state dynamics during blood formation
Relations
BioSample SAMN02949092
SRA SRX667507

Supplementary file Size Download File type/resource
GSM1463177_NK.ucsc.bigWig 109.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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