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Sample GSM1450466 Query DataSets for GSM1450466
Status Public on Nov 30, 2014
Title TU_IDC_9
Sample type genomic
 
Source name PrimaryTumorTissue
Organism Homo sapiens
Characteristics tissue type: Tumor
tissue subtype: Invasive ductal breast carcinoma
sample type: fresh-frozen
Extracted molecule genomic DNA
Extraction protocol DNA was extracted by Proteinase K treatment with subsequent phenol-chloroform extraction
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulfite converted genomic DNA was amplified, fragmented, and hybridized to Illumina´s Infinium HumanMethylation450 BeadChip according to the manufacturer’s protocol
Scan protocol Arrays were scanned using BeadArray Reader according to the manufacturer´s instructions
Description 6929689048_R05C01
Data processing GenomeStudio® Methylation module software (version 1.9, Illumina Inc.) was used to calculate beta-values and corresponding p-values, by normalizing over internal controls
 
Submission date Jul 30, 2014
Last update date Nov 30, 2014
Contact name Jessica Rößler
Organization name Medical School Hannover
Department Pathology
Street address Carl-Neuberg Str. 1
City Hannover
ZIP/Postal code 30625
Country Germany
 
Platform ID GPL13534
Series (2)
GSE59901 DNA methylation study in breast cancer [methylation]
GSE59903 DNA methylation study in breast cancer

Data table header descriptions
ID_REF
VALUE Average beta-values; Intensity; Detection p-values
Intensity
Detection Pval

Data table
ID_REF VALUE Intensity Detection Pval
cg00000029 0.1679042 5015.014 0
cg00000108 0.9194272 7753.93 0
cg00000109 0.840551 3314.314 0
cg00000165 0.6124563 4569.259 0
cg00000236 0.8296028 3038.855 0
cg00000289 0.4388271 2353.93 0
cg00000292 0.644999 11980.07 0
cg00000321 0.2796042 6768.285 0
cg00000363 0.2319157 14313.08 0
cg00000622 0.01493569 19416.62 0
cg00000658 0.7816002 13152.22 0
cg00000714 0.12674 24392.86 0
cg00000721 0.914923 5386.289 0
cg00000734 0.08335768 15165.02 0
cg00000769 0.07561071 13225.81 0
cg00000807 0.6398969 22109.81 0
cg00000884 0.8015864 4841.475 0
cg00000905 0.08420167 3009.518 0
cg00000924 0.464341 17239.46 0
cg00000948 0.593573 18731.82 0

Total number of rows: 485577

Table truncated, full table size 15201 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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