|
Status |
Public on Nov 30, 2014 |
Title |
TU_IDC_9 |
Sample type |
genomic |
|
|
Source name |
PrimaryTumorTissue
|
Organism |
Homo sapiens |
Characteristics |
tissue type: Tumor tissue subtype: Invasive ductal breast carcinoma sample type: fresh-frozen
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA was extracted by Proteinase K treatment with subsequent phenol-chloroform extraction
|
Label |
Cy3 and Cy5
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
Bisulfite converted genomic DNA was amplified, fragmented, and hybridized to Illumina´s Infinium HumanMethylation450 BeadChip according to the manufacturer’s protocol
|
Scan protocol |
Arrays were scanned using BeadArray Reader according to the manufacturer´s instructions
|
Description |
6929689048_R05C01
|
Data processing |
GenomeStudio® Methylation module software (version 1.9, Illumina Inc.) was used to calculate beta-values and corresponding p-values, by normalizing over internal controls
|
|
|
Submission date |
Jul 30, 2014 |
Last update date |
Nov 30, 2014 |
Contact name |
Jessica Rößler |
Organization name |
Medical School Hannover
|
Department |
Pathology
|
Street address |
Carl-Neuberg Str. 1
|
City |
Hannover |
ZIP/Postal code |
30625 |
Country |
Germany |
|
|
Platform ID |
GPL13534 |
Series (2) |
GSE59901 |
DNA methylation study in breast cancer [methylation] |
GSE59903 |
DNA methylation study in breast cancer |
|