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Sample GSM1437763 Query DataSets for GSM1437763
Status Public on Aug 12, 2014
Title PBMC genomic DNA_CFS5
Sample type genomic
Source name CFS PBMC
Organism Homo sapiens
Characteristics gender: female
subject id: CFS subject 5
disease state: Chronic Fatigue Syndrome (CFS)
cell type: peripheral blood mononuclear cells (PBMC)
Extracted molecule genomic DNA
Extraction protocol Omega EZNA Tissue DNA Kit; Qiagen MinElute Reaction Cleanup Kit; Genome Quebec sample processing protocols
Label Cy3,Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Illumina Protocol
Scan protocol Standard Illumina Protocol
Description PBMC genomic DNA from CFS subject 5
Data processing Illumina Genome Studio; the non_normalized.txt contains unmethylated (A) and methylated (B) signal intensities.
Submission date Jul 16, 2014
Last update date Aug 12, 2014
Contact name Patrick McGowan
Organization name University of Toronto Scarborough
Department Biological Sciences
Lab SW326
Street address 1265 Military Trail
City Toronto
State/province Ontario
ZIP/Postal code M1C 1A4
Country Canada
Platform ID GPL13534
Series (1)
GSE59489 DNA methylation modifications associated with Chronic Fatigue Syndrome

Data table header descriptions
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.62333 0
cg00000108 0.93779 0
cg00000109 0.85395 0
cg00000165 0.31621 0
cg00000236 0.84101 0
cg00000289 0.70068 0
cg00000292 0.86805 0
cg00000321 0.42532 0
cg00000363 0.44158 0
cg00000622 0.02367 0
cg00000658 0.86419 0
cg00000714 0.29448 0
cg00000721 0.91494 0
cg00000734 0.09837 0
cg00000769 0.05292 0
cg00000807 0.82237 0
cg00000884 0.84847 0
cg00000905 0.1209 0
cg00000924 0.56228 0
cg00000948 0.91071 0

Total number of rows: 485577

Table truncated, full table size 9918 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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