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Sample GSM1437762 Query DataSets for GSM1437762
Status Public on Aug 12, 2014
Title PBMC genomic DNA_CFS4
Sample type genomic
 
Source name CFS PBMC
Organism Homo sapiens
Characteristics gender: female
subject id: CFS subject 4
disease state: Chronic Fatigue Syndrome (CFS)
cell type: peripheral blood mononuclear cells (PBMC)
Extracted molecule genomic DNA
Extraction protocol Omega EZNA Tissue DNA Kit; Qiagen MinElute Reaction Cleanup Kit; Genome Quebec sample processing protocols
Label Cy3,Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina Protocol
Scan protocol Standard Illumina Protocol
Description PBMC genomic DNA from CFS subject 4
7985#WG0153568-DNA#A04#G00042
Data processing Illumina Genome Studio; the non_normalized.txt contains unmethylated (A) and methylated (B) signal intensities.
 
Submission date Jul 16, 2014
Last update date Aug 12, 2014
Contact name Patrick McGowan
E-mail(s) patrick.mcgowan@utoronto.ca
Organization name University of Toronto Scarborough
Department Biological Sciences
Lab SW326
Street address 1265 Military Trail
City Toronto
State/province Ontario
ZIP/Postal code M1C 1A4
Country Canada
 
Platform ID GPL13534
Series (1)
GSE59489 DNA methylation modifications associated with Chronic Fatigue Syndrome

Data table header descriptions
ID_REF
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.60793 0
cg00000108 0.93492 0
cg00000109 0.86332 0
cg00000165 0.27689 0
cg00000236 0.77759 0
cg00000289 0.6958 0
cg00000292 0.85138 0
cg00000321 0.34361 0
cg00000363 0.49892 0
cg00000622 0.0318 0
cg00000658 0.8544 0
cg00000714 0.23942 0
cg00000721 0.93404 0
cg00000734 0.10013 0
cg00000769 0.05806 0
cg00000807 0.86232 0
cg00000884 0.87089 0
cg00000905 0.14699 0
cg00000924 0.58694 0
cg00000948 0.89161 0

Total number of rows: 485577

Table truncated, full table size 9917 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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