NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1429620 Query DataSets for GSM1429620
Status Public on Jul 08, 2014
Title genomic DNA from formalin fixed paraffin embedded Wilms tumour 35
Sample type genomic
 
Source name Wilms tumour 35
Organism Homo sapiens
Characteristics tissue: Wilms tumour
matched trios: matched trio 18
matched pairs: matched pair 20
Sex: F
laterality: bilateral
overall tumour histology: mixed
disease state: cancer
age (months): 20
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from formalin fixed paraffin embedded tissue using the Dneasy kit (QIAGEN)
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description SAMPLE 93
Data processing BeadStudio software v3.2
 
Submission date Jul 07, 2014
Last update date Mar 07, 2017
Contact name Jocelyn Charlton
E-mail(s) jocelyn.charlton.11@ucl.ac.uk
Phone 07969338982
Organization name University College London
Department Institute of Child Health
Street address 30 Guilford Street
City London
ZIP/Postal code WC1N 1EH
Country United Kingdom
 
Platform ID GPL13534
Series (1)
GSE59157 Methylome analysis of normal kidney, nephrogenic rest and Wilms tumor

Data table header descriptions
ID_REF
VALUE Average Beta
SAMPLE 93 Detection Pval

Data table
ID_REF VALUE SAMPLE 93 Detection Pval
cg00000029 0.43547321 0
cg00000108 0.934489075 0
cg00000109 0.858926505 0
cg00000165 0.532084935 0
cg00000236 0.787233104 0
cg00000289 0.669352633 0
cg00000292 0.326723535 0
cg00000321 0.786884418 0
cg00000363 0.197769008 0
cg00000622 0.016387563 0
cg00000658 0.882283788 0
cg00000714 0.089418825 0
cg00000721 0.836878743 0
cg00000734 0.112583553 0
cg00000769 0.05783911 0
cg00000807 0.603981527 0
cg00000884 0.873123393 0
cg00000905 0.110194566 0
cg00000924 0.782539202 0
cg00000948 0.914867618 0

Total number of rows: 485512

Table truncated, full table size 11817 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap