|
Status |
Public on Jul 08, 2014 |
Title |
genomic DNA from formalin fixed paraffin embedded Wilms tumour 20 |
Sample type |
genomic |
|
|
Source name |
Wilms tumour 20
|
Organism |
Homo sapiens |
Characteristics |
tissue: Wilms tumour matched trios: matched trio 10 matched pairs: matched pair 11 Sex: F laterality: unilateral overall tumour histology: mixed disease state: cancer age (months): 23
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA was extracted from formalin fixed paraffin embedded tissue using the Dneasy kit (QIAGEN)
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
SAMPLE 78
|
Data processing |
BeadStudio software v3.2
|
|
|
Submission date |
Jul 07, 2014 |
Last update date |
Mar 07, 2017 |
Contact name |
Jocelyn Charlton |
E-mail(s) |
jocelyn.charlton.11@ucl.ac.uk
|
Phone |
07969338982
|
Organization name |
University College London
|
Department |
Institute of Child Health
|
Street address |
30 Guilford Street
|
City |
London |
ZIP/Postal code |
WC1N 1EH |
Country |
United Kingdom |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE59157 |
Methylome analysis of normal kidney, nephrogenic rest and Wilms tumor |
|