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Sample GSM1429578 Query DataSets for GSM1429578
Status Public on Jul 08, 2014
Title genomic DNA from formalin fixed paraffin embedded nephrogenic rest 15
Sample type genomic
Source name nephrogenic rest 15
Organism Homo sapiens
Characteristics tissue: nephrogenic rest
matched trios: NA
matched pairs: NA
Sex: F
laterality: NA
overall tumour histology: NA
disease state: precursor
age (months): 21
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from formalin fixed paraffin embedded tissue using the Dneasy kit (QIAGEN)
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description SAMPLE 51
Data processing BeadStudio software v3.2
Submission date Jul 07, 2014
Last update date Mar 07, 2017
Contact name Jocelyn Charlton
Phone 07969338982
Organization name University College London
Department Institute of Child Health
Street address 30 Guilford Street
City London
ZIP/Postal code WC1N 1EH
Country United Kingdom
Platform ID GPL13534
Series (1)
GSE59157 Methylome analysis of normal kidney, nephrogenic rest and Wilms tumor

Data table header descriptions
VALUE Average Beta
SAMPLE 51 Detection Pval

Data table
ID_REF VALUE SAMPLE 51 Detection Pval
cg00000029 0.296375137 0.001631321
cg00000108 0.860859176 0
cg00000109 0.627968308 0
cg00000165 0.367526339 0.001631321
cg00000236 0.627910506 0
cg00000289 0.467153212 0
cg00000292 0.429841864 0
cg00000321 0.633069289 0
cg00000363 0.287266173 0
cg00000622 0.018615579 0
cg00000658 0.664532737 0
cg00000714 0.210571513 0
cg00000721 0.908055033 0
cg00000734 0.132788527 0
cg00000769 0.085718685 0
cg00000807 0.611274012 0
cg00000884 0.818416591 0
cg00000905 0.171867671 0
cg00000924 0.512535703 0
cg00000948 0.820399048 0

Total number of rows: 485512

Table truncated, full table size 12152 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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