NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1425435 Query DataSets for GSM1425435
Status Public on Jul 31, 2014
Title ESC.A5.1
Sample type RNA
 
Source name embryonic stem cells
Organism Mus musculus
Characteristics cell type: embryonic stem cells
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using TRIZOL
Label Cy3
Label protocol Labeling was performed by NimbleGen Systems Inc., Madison, WI USA, following their standard operating protocol. See www.nimblegen.com.
 
Hybridization protocol Hybridization was performed by NimbleGen Systems Inc., Madison, WI, USA following their standard operating protocol. See www.nimblegen.com.
Scan protocol Scanning was performed by NimbleGen Systems Inc., Madison, WI USA, following their standard operating protocol. See www.nimblegen.com.
Data processing RMA package. Fold-change and statistical significance were estimated for the log2 expression values of each gene based on the data for individual replicates within each replicate set.
 
Submission date Jul 03, 2014
Last update date Jul 31, 2014
Contact name Robert E Kingston
Organization name Massachusetts General Hospital
Street address 185 Cambridge Street
City Boston
State/province MA
ZIP/Postal code 02114
Country USA
 
Platform ID GPL10994
Series (2)
GSE59061 Nucleosome occupancy changes in mammalian cell differentiation and reprogramming (microarray)
GSE59064 Nucleosome occupancy changes in mammalian cell differentiation and reprogramming

Data table header descriptions
ID_REF
VALUE RMA-normalized

Data table
ID_REF VALUE
AB000096P02355 91.67
AB000096P02849 516.36
AB000096P02877 414.02
AB000490P02127 26.69
AB000490P02535 91.67
AB000490P02759 44.97
AB001425P00054 122.81
AB001425P00236 44.41
AB001425P00380 175.91
AB001435P00024 178.17
AB001435P00162 37.19
AB001435P00406 128.61
AB001539P00497 3352.32
AB001539P01447 11907.94
AB001539P01455 13450.57
AB001750P01680 2997.23
AB001750P02618 7634.48
AB001750P03079 4492.36
AB001926P01533 1494.98
AB001926P01923 1466.44

Total number of rows: 132489

Table truncated, full table size 2884 Kbytes.




Supplementary file Size Download File type/resource
GSM1425435_40806802_532.pair.gz 2.1 Mb (ftp)(http) PAIR
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap