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Sample GSM1415551 Query DataSets for GSM1415551
Status Public on May 06, 2015
Title X8942326097_PO2.3
Sample type genomic
Source name Post-obese_isolated_cells-2_years
Organism Homo sapiens
Characteristics gender: Female
cell type: Fat cell
disease state: postobese
age: 32
bmi: 26.7
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was prepared from fat cells using the QiAamp DNA Mini kit (cat no. 51304, Qiagen, Hilden, Germany).
Label Biotin
Label protocol Standard Illumina protocol for Human Methylation 450K DNA Analysis bead chip
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 4971c
Unmethylated and methylated signal intensities provided in signal_intensities.txt Series supplementary file
Data processing data was normalized and analyzed using Genom Studio software, R packages and Qlucore software.
Submission date Jun 18, 2014
Last update date May 06, 2015
Contact name Ingrid Dahlman
Organization name Karolinska Institute
Department Department of Medicine
Street address Hälsovägen 7
City Huddinge
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58622 The fat cell epigenetic signature in post-obese women is characterized by global hypomethylation and differential DNA methylation of adipogenesis genes

Data table header descriptions
VALUE Average Beta or normalized (provide the normalization method) Average Beta

Data table
cg00000029 0.10182992
cg00000108 0.955617946
cg00000109 0.556739759
cg00000165 0.180812303
cg00000236 0.81789512
cg00000289 0.693046179
cg00000292 0.440055297
cg00000321 0.071508223
cg00000363 0.076327037
cg00000622 0.032516688
cg00000658 0.855544074
cg00000714 0.036836627
cg00000721 0.961958269
cg00000734 0.028911781
cg00000769 0.059431969
cg00000807 0.869013568
cg00000884 0.896346265
cg00000905 0.05901831
cg00000924 0.468306943
cg00000948 0.956461719

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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