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Sample GSM1415549 Query DataSets for GSM1415549
Status Public on May 06, 2015
Title X8942326097_PO2.2
Sample type genomic
Source name Post-obese_isolated_cells-2_years
Organism Homo sapiens
Characteristics gender: Female
cell type: Fat cell
disease state: postobese
age: 60
bmi: 23.3
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was prepared from fat cells using the QiAamp DNA Mini kit (cat no. 51304, Qiagen, Hilden, Germany).
Label Biotin
Label protocol Standard Illumina protocol for Human Methylation 450K DNA Analysis bead chip
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 4946c
Unmethylated and methylated signal intensities provided in signal_intensities.txt Series supplementary file
Data processing data was normalized and analyzed using Genom Studio software, R packages and Qlucore software.
Submission date Jun 18, 2014
Last update date May 06, 2015
Contact name Ingrid Dahlman
Organization name Karolinska Institute
Department Department of Medicine
Street address Hälsovägen 7
City Huddinge
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58622 The fat cell epigenetic signature in post-obese women is characterized by global hypomethylation and differential DNA methylation of adipogenesis genes

Data table header descriptions
VALUE Average Beta or normalized (provide the normalization method) Average Beta

Data table
cg00000029 0.071368916
cg00000108 0.966371616
cg00000109 0.571401326
cg00000165 0.152205136
cg00000236 0.780779566
cg00000289 0.678376411
cg00000292 0.433190666
cg00000321 0.080358793
cg00000363 0.062580805
cg00000622 0.02002823
cg00000658 0.812985176
cg00000714 0.03547077
cg00000721 0.971721537
cg00000734 0.03582867
cg00000769 0.065303861
cg00000807 0.882477388
cg00000884 0.931083833
cg00000905 0.082564394
cg00000924 0.360557947
cg00000948 0.938954375

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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