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Sample GSM1415547 Query DataSets for GSM1415547
Status Public on May 06, 2015
Title X8942326097_PO2
Sample type genomic
Source name Post-obese_isolated_cells-2_years
Organism Homo sapiens
Characteristics gender: Female
cell type: Fat cell
disease state: postobese
age: 38
bmi: 26.3
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was prepared from fat cells using the QiAamp DNA Mini kit (cat no. 51304, Qiagen, Hilden, Germany).
Label Biotin
Label protocol Standard Illumina protocol for Human Methylation 450K DNA Analysis bead chip
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 4979c
Unmethylated and methylated signal intensities provided in signal_intensities.txt Series supplementary file
Data processing data was normalized and analyzed using Genom Studio software, R packages and Qlucore software.
Submission date Jun 18, 2014
Last update date May 06, 2015
Contact name Ingrid Dahlman
Organization name Karolinska Institute
Department Department of Medicine
Street address Hälsovägen 7
City Huddinge
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58622 The fat cell epigenetic signature in post-obese women is characterized by global hypomethylation and differential DNA methylation of adipogenesis genes

Data table header descriptions
VALUE Average Beta or normalized (provide the normalization method) Average Beta

Data table
cg00000029 0.048721243
cg00000108 0.942261732
cg00000109 0.799651931
cg00000165 0.124620293
cg00000236 0.831940508
cg00000289 0.617629118
cg00000292 0.472051305
cg00000321 0.105600742
cg00000363 0.222677281
cg00000622 0.016809109
cg00000658 0.872561751
cg00000714 0.075719808
cg00000721 0.974237411
cg00000734 0.054690944
cg00000769 0.063031204
cg00000807 0.80626572
cg00000884 0.92206605
cg00000905 0.093804532
cg00000924 0.397065841
cg00000948 0.949652963

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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