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Sample GSM1415545 Query DataSets for GSM1415545
Status Public on May 06, 2015
Title X8942326097_PO2.1
Sample type genomic
Source name Post-obese_isolated_cells-2_years
Organism Homo sapiens
Characteristics gender: Female
cell type: Fat cell
disease state: postobese
age: 60
bmi: 28.4
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was prepared from fat cells using the QiAamp DNA Mini kit (cat no. 51304, Qiagen, Hilden, Germany).
Label Biotin
Label protocol Standard Illumina protocol for Human Methylation 450K DNA Analysis bead chip
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 4666c
Unmethylated and methylated signal intensities provided in signal_intensities.txt Series supplementary file
Data processing data was normalized and analyzed using Genom Studio software, R packages and Qlucore software.
Submission date Jun 18, 2014
Last update date May 06, 2015
Contact name Ingrid Dahlman
Organization name Karolinska Institute
Department Department of Medicine
Street address Hälsovägen 7
City Huddinge
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58622 The fat cell epigenetic signature in post-obese women is characterized by global hypomethylation and differential DNA methylation of adipogenesis genes

Data table header descriptions
VALUE Average Beta or normalized (provide the normalization method) Average Beta

Data table
cg00000029 0.123266633
cg00000108 0.93348793
cg00000109 0.576431218
cg00000165 0.206985714
cg00000236 0.873906073
cg00000289 0.637493104
cg00000292 0.452678491
cg00000321 0.096313663
cg00000363 0.162374358
cg00000622 0.019386529
cg00000658 0.859630209
cg00000714 0.041557945
cg00000721 0.978431417
cg00000734 0.038921665
cg00000769 0.052172632
cg00000807 0.799904967
cg00000884 0.912173991
cg00000905 0.071579332
cg00000924 0.42681118
cg00000948 0.969607779

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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