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Sample GSM1415541 Query DataSets for GSM1415541
Status Public on May 06, 2015
Title X8942326001_Control.1
Sample type genomic
Source name Control_Isolated_cells
Organism Homo sapiens
Characteristics gender: Female
cell type: Fat cell
disease state: control
age: 50
bmi: 23.500
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was prepared from fat cells using the QiAamp DNA Mini kit (cat no. 51304, Qiagen, Hilden, Germany).
Label Biotin
Label protocol Standard Illumina protocol for Human Methylation 450K DNA Analysis bead chip
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 465
Unmethylated and methylated signal intensities provided in signal_intensities.txt Series supplementary file
Data processing data was normalized and analyzed using Genom Studio software, R packages and Qlucore software.
Submission date Jun 18, 2014
Last update date May 06, 2015
Contact name Ingrid Dahlman
Organization name Karolinska Institute
Department Department of Medicine
Street address Hälsovägen 7
City Huddinge
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (2)
GSE58622 The fat cell epigenetic signature in post-obese women is characterized by global hypomethylation and differential DNA methylation of adipogenesis genes
GSE67024 The epigenetic signature of subcutaneous fat cells is linked to altered expression of genes implicated in lipid metabolism in obese women

Data table header descriptions
VALUE Average Beta or normalized (provide the normalization method) Average Beta

Data table
cg00000029 0.104811239
cg00000108 0.942377514
cg00000109 0.65426
cg00000165 0.193496795
cg00000236 0.791444957
cg00000289 0.765545799
cg00000292 0.498090849
cg00000321 0.075973616
cg00000363 0.084984552
cg00000622 0.017522673
cg00000658 0.892359551
cg00000714 0.046872464
cg00000721 0.968438747
cg00000734 0.028620412
cg00000769 0.042768068
cg00000807 0.800114862
cg00000884 0.909566418
cg00000905 0.067201694
cg00000924 0.474874087
cg00000948 0.968578337

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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