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Sample GSM1415539 Query DataSets for GSM1415539
Status Public on May 06, 2015
Title X8942326001_Control
Sample type genomic
Source name Control_Isolated_cells
Organism Homo sapiens
Characteristics gender: Female
cell type: Fat cell
disease state: control
age: 61
bmi: 27.500
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was prepared from fat cells using the QiAamp DNA Mini kit (cat no. 51304, Qiagen, Hilden, Germany).
Label Biotin
Label protocol Standard Illumina protocol for Human Methylation 450K DNA Analysis bead chip
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 5886
Unmethylated and methylated signal intensities provided in signal_intensities.txt Series supplementary file
Data processing data was normalized and analyzed using Genom Studio software, R packages and Qlucore software.
Submission date Jun 18, 2014
Last update date May 06, 2015
Contact name Ingrid Dahlman
Organization name Karolinska Institute
Department Department of Medicine
Street address Hälsovägen 7
City Huddinge
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (2)
GSE58622 The fat cell epigenetic signature in post-obese women is characterized by global hypomethylation and differential DNA methylation of adipogenesis genes
GSE67024 The epigenetic signature of subcutaneous fat cells is linked to altered expression of genes implicated in lipid metabolism in obese women

Data table header descriptions
VALUE Average Beta or normalized (provide the normalization method) Average Beta

Data table
cg00000029 0.084628474
cg00000108 0.944388812
cg00000109 0.552679454
cg00000165 0.193513729
cg00000236 0.802917524
cg00000289 0.700472408
cg00000292 0.366904365
cg00000321 0.094532293
cg00000363 0.081642155
cg00000622 0.025593948
cg00000658 0.906068561
cg00000714 0.041996672
cg00000721 0.976559176
cg00000734 0.033712739
cg00000769 0.05308299
cg00000807 0.826241876
cg00000884 0.922261371
cg00000905 0.057704
cg00000924 0.471513786
cg00000948 0.967961855

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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