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Sample GSM1415538 Query DataSets for GSM1415538
Status Public on May 06, 2015
Title X8942326001_PO2.1
Sample type genomic
Source name Post-obese_isolated_cells-2_years
Organism Homo sapiens
Characteristics gender: Female
cell type: Fat cell
disease state: postobese
age: 48
bmi: 29.9
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was prepared from fat cells using the QiAamp DNA Mini kit (cat no. 51304, Qiagen, Hilden, Germany).
Label Biotin
Label protocol Standard Illumina protocol for Human Methylation 450K DNA Analysis bead chip
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 4595c
Unmethylated and methylated signal intensities provided in signal_intensities.txt Series supplementary file
Data processing data was normalized and analyzed using Genom Studio software, R packages and Qlucore software.
Submission date Jun 18, 2014
Last update date May 06, 2015
Contact name Ingrid Dahlman
Organization name Karolinska Institute
Department Department of Medicine
Street address Hälsovägen 7
City Huddinge
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58622 The fat cell epigenetic signature in post-obese women is characterized by global hypomethylation and differential DNA methylation of adipogenesis genes

Data table header descriptions
VALUE Average Beta or normalized (provide the normalization method) Average Beta

Data table
cg00000029 0.056554404
cg00000108 0.945047037
cg00000109 0.65446085
cg00000165 0.164509489
cg00000236 0.807077132
cg00000289 0.564450554
cg00000292 0.409282481
cg00000321 0.072309723
cg00000363 0.073602849
cg00000622 0.017673077
cg00000658 0.882209525
cg00000714 0.081265379
cg00000721 0.970937664
cg00000734 0.06441034
cg00000769 0.047177139
cg00000807 0.877418373
cg00000884 0.921125027
cg00000905 0.042000869
cg00000924 0.327713562
cg00000948 0.966979911

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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