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Sample GSM1415534 Query DataSets for GSM1415534
Status Public on May 06, 2015
Title X8942326001_PO2.2
Sample type genomic
Source name Post-obese_isolated_cells-2_years
Organism Homo sapiens
Characteristics gender: Female
cell type: Fat cell
disease state: postobese
age: 31
bmi: 27.5
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was prepared from fat cells using the QiAamp DNA Mini kit (cat no. 51304, Qiagen, Hilden, Germany).
Label Biotin
Label protocol Standard Illumina protocol for Human Methylation 450K DNA Analysis bead chip
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 4649c
Unmethylated and methylated signal intensities provided in signal_intensities.txt Series supplementary file
Data processing data was normalized and analyzed using Genom Studio software, R packages and Qlucore software.
Submission date Jun 18, 2014
Last update date May 06, 2015
Contact name Ingrid Dahlman
Organization name Karolinska Institute
Department Department of Medicine
Street address Hälsovägen 7
City Huddinge
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58622 The fat cell epigenetic signature in post-obese women is characterized by global hypomethylation and differential DNA methylation of adipogenesis genes

Data table header descriptions
VALUE Average Beta or normalized (provide the normalization method) Average Beta

Data table
cg00000029 0.064445983
cg00000108 0.975333256
cg00000109 0.541265987
cg00000165 0.153389956
cg00000236 0.825066241
cg00000289 0.589044021
cg00000292 0.485687924
cg00000321 0.086412211
cg00000363 0.082242259
cg00000622 0.01448284
cg00000658 0.887835185
cg00000714 0.047795284
cg00000721 0.965576113
cg00000734 0.036148348
cg00000769 0.06199714
cg00000807 0.835844329
cg00000884 0.913252302
cg00000905 0.056749934
cg00000924 0.404844271
cg00000948 0.946680555

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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