GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1415530 Query DataSets for GSM1415530
Status Public on May 06, 2015
Title X8942300210_Control.3
Sample type genomic
Source name Control_Isolated_cells
Organism Homo sapiens
Characteristics gender: Female
cell type: Fat cell
disease state: control
age: 49
bmi: 26.600
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was prepared from fat cells using the QiAamp DNA Mini kit (cat no. 51304, Qiagen, Hilden, Germany).
Label Biotin
Label protocol Standard Illumina protocol for Human Methylation 450K DNA Analysis bead chip
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 5917
Unmethylated and methylated signal intensities provided in signal_intensities.txt Series supplementary file
Data processing data was normalized and analyzed using Genom Studio software, R packages and Qlucore software.
Submission date Jun 18, 2014
Last update date May 06, 2015
Contact name Ingrid Dahlman
Organization name Karolinska Institute
Department Department of Medicine
Street address Hälsovägen 7
City Huddinge
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (2)
GSE58622 The fat cell epigenetic signature in post-obese women is characterized by global hypomethylation and differential DNA methylation of adipogenesis genes
GSE67024 The epigenetic signature of subcutaneous fat cells is linked to altered expression of genes implicated in lipid metabolism in obese women

Data table header descriptions
VALUE Average Beta or normalized (provide the normalization method) Average Beta

Data table
cg00000029 0.112523672
cg00000108 0.937393803
cg00000109 0.517803222
cg00000165 0.209905659
cg00000236 0.78183927
cg00000289 0.732471499
cg00000292 0.508045125
cg00000321 0.091666331
cg00000363 0.060301915
cg00000622 0.01498574
cg00000658 0.878445555
cg00000714 0.03735183
cg00000721 0.975171473
cg00000734 0.02870976
cg00000769 0.061031547
cg00000807 0.815743141
cg00000884 0.898765389
cg00000905 0.066487496
cg00000924 0.444549603
cg00000948 0.960928759

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap