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Sample GSM1415527 Query DataSets for GSM1415527
Status Public on May 06, 2015
Title X8942300210_PO2.2
Sample type genomic
Source name Post-obese_isolated_cells-2_years
Organism Homo sapiens
Characteristics gender: Female
cell type: Fat cell
disease state: postobese
age: 36
bmi: 25.1
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was prepared from fat cells using the QiAamp DNA Mini kit (cat no. 51304, Qiagen, Hilden, Germany).
Label Biotin
Label protocol Standard Illumina protocol for Human Methylation 450K DNA Analysis bead chip
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 4957c
Unmethylated and methylated signal intensities provided in signal_intensities.txt Series supplementary file
Data processing data was normalized and analyzed using Genom Studio software, R packages and Qlucore software.
Submission date Jun 18, 2014
Last update date May 06, 2015
Contact name Ingrid Dahlman
Organization name Karolinska Institute
Department Department of Medicine
Street address Hälsovägen 7
City Huddinge
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58622 The fat cell epigenetic signature in post-obese women is characterized by global hypomethylation and differential DNA methylation of adipogenesis genes

Data table header descriptions
VALUE Average Beta or normalized (provide the normalization method) Average Beta

Data table
cg00000029 0.178610359
cg00000108 0.972036756
cg00000109 0.777887027
cg00000165 0.224330829
cg00000236 0.901685765
cg00000289 0.702836256
cg00000292 0.470093376
cg00000321 0.15657813
cg00000363 0.088269435
cg00000622 0.022686953
cg00000658 0.917972745
cg00000714 0.051397271
cg00000721 0.961571892
cg00000734 0.045044025
cg00000769 0.064760926
cg00000807 0.843668072
cg00000884 0.875685834
cg00000905 0.048248697
cg00000924 0.47030061
cg00000948 0.965825307

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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