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Sample GSM1415520 Query DataSets for GSM1415520
Status Public on May 06, 2015
Title X8221932080_Control
Sample type genomic
Source name Control_Isolated_cells
Organism Homo sapiens
Characteristics gender: Female
cell type: Fat cell
disease state: control
age: 47
bmi: 30.000
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was prepared from fat cells using the QiAamp DNA Mini kit (cat no. 51304, Qiagen, Hilden, Germany).
Label Biotin
Label protocol Standard Illumina protocol for Human Methylation 450K DNA Analysis bead chip
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 5960
Unmethylated and methylated signal intensities provided in signal_intensities.txt Series supplementary file
Data processing data was normalized and analyzed using Genom Studio software, R packages and Qlucore software.
Submission date Jun 18, 2014
Last update date May 06, 2015
Contact name Ingrid Dahlman
Organization name Karolinska Institute
Department Department of Medicine
Street address Hälsovägen 7
City Huddinge
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (2)
GSE58622 The fat cell epigenetic signature in post-obese women is characterized by global hypomethylation and differential DNA methylation of adipogenesis genes
GSE67024 The epigenetic signature of subcutaneous fat cells is linked to altered expression of genes implicated in lipid metabolism in obese women

Data table header descriptions
VALUE Average Beta or normalized (provide the normalization method) Average Beta

Data table
cg00000029 0.084796643
cg00000108 0.962102841
cg00000109 0.597391596
cg00000165 0.132045542
cg00000236 0.801444258
cg00000289 0.751102827
cg00000292 0.468613749
cg00000321 0.113019913
cg00000363 0.074944928
cg00000622 0.014229623
cg00000658 0.855477902
cg00000714 0.05180459
cg00000721 0.976583287
cg00000734 0.035386126
cg00000769 0.063102788
cg00000807 0.813779225
cg00000884 0.911449621
cg00000905 0.057555486
cg00000924 0.445733761
cg00000948 0.967365216

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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