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Sample GSM1415516 Query DataSets for GSM1415516
Status Public on May 06, 2015
Title X8221932080_Control.3
Sample type genomic
Source name Control_Isolated_cells
Organism Homo sapiens
Characteristics gender: Female
cell type: Fat cell
disease state: control
age: 25
bmi: 26.900
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was prepared from fat cells using the QiAamp DNA Mini kit (cat no. 51304, Qiagen, Hilden, Germany).
Label Biotin
Label protocol Standard Illumina protocol for Human Methylation 450K DNA Analysis bead chip
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 4911
Unmethylated and methylated signal intensities provided in signal_intensities.txt Series supplementary file
Data processing data was normalized and analyzed using Genom Studio software, R packages and Qlucore software.
Submission date Jun 18, 2014
Last update date May 06, 2015
Contact name Ingrid Dahlman
Organization name Karolinska Institute
Department Department of Medicine
Street address Hälsovägen 7
City Huddinge
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (2)
GSE58622 The fat cell epigenetic signature in post-obese women is characterized by global hypomethylation and differential DNA methylation of adipogenesis genes
GSE67024 The epigenetic signature of subcutaneous fat cells is linked to altered expression of genes implicated in lipid metabolism in obese women

Data table header descriptions
VALUE Average Beta or normalized (provide the normalization method) Average Beta

Data table
cg00000029 0.077912107
cg00000108 0.955438797
cg00000109 0.731302533
cg00000165 0.220901246
cg00000236 0.823526092
cg00000289 0.679344198
cg00000292 0.457889323
cg00000321 0.117479511
cg00000363 0.073487848
cg00000622 0.016737707
cg00000658 0.845238323
cg00000714 0.051753338
cg00000721 0.972384128
cg00000734 0.044467642
cg00000769 0.057704298
cg00000807 0.75363806
cg00000884 0.910274949
cg00000905 0.049544624
cg00000924 0.3849446
cg00000948 0.962528441

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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