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Sample GSM1415513 Query DataSets for GSM1415513
Status Public on May 06, 2015
Title X8221932080_PO2.2
Sample type genomic
Source name Post-obese_isolated_cells-2_years
Organism Homo sapiens
Characteristics gender: Female
cell type: Fat cell
disease state: postobese
age: 54
bmi: 22.6
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was prepared from fat cells using the QiAamp DNA Mini kit (cat no. 51304, Qiagen, Hilden, Germany).
Label Biotin
Label protocol Standard Illumina protocol for Human Methylation 450K DNA Analysis bead chip
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 4938c
Unmethylated and methylated signal intensities provided in signal_intensities.txt Series supplementary file
Data processing data was normalized and analyzed using Genom Studio software, R packages and Qlucore software.
Submission date Jun 18, 2014
Last update date May 06, 2015
Contact name Ingrid Dahlman
Organization name Karolinska Institute
Department Department of Medicine
Street address Hälsovägen 7
City Huddinge
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58622 The fat cell epigenetic signature in post-obese women is characterized by global hypomethylation and differential DNA methylation of adipogenesis genes

Data table header descriptions
VALUE Average Beta or normalized (provide the normalization method) Average Beta

Data table
cg00000029 0.100899501
cg00000108 0.956483298
cg00000109 0.554218313
cg00000165 0.160238677
cg00000236 0.863872479
cg00000289 0.614836201
cg00000292 0.454218946
cg00000321 0.078115106
cg00000363 0.051871765
cg00000622 0.010242694
cg00000658 0.840964802
cg00000714 0.068660394
cg00000721 0.975812594
cg00000734 0.046333037
cg00000769 0.054067665
cg00000807 0.916752355
cg00000884 0.889637427
cg00000905 0.039987312
cg00000924 0.376949162
cg00000948 0.96962965

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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