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Sample GSM1415511 Query DataSets for GSM1415511
Status Public on May 06, 2015
Title X8221932080_PO2.1
Sample type genomic
Source name Post-obese_isolated_cells-2_years
Organism Homo sapiens
Characteristics gender: Female
cell type: Fat cell
disease state: postobese
age: 43
bmi: 25.5
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was prepared from fat cells using the QiAamp DNA Mini kit (cat no. 51304, Qiagen, Hilden, Germany).
Label Biotin
Label protocol Standard Illumina protocol for Human Methylation 450K DNA Analysis bead chip
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 4640c
Unmethylated and methylated signal intensities provided in signal_intensities.txt Series supplementary file
Data processing data was normalized and analyzed using Genom Studio software, R packages and Qlucore software.
Submission date Jun 18, 2014
Last update date May 06, 2015
Contact name Ingrid Dahlman
Organization name Karolinska Institute
Department Department of Medicine
Street address Hälsovägen 7
City Huddinge
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58622 The fat cell epigenetic signature in post-obese women is characterized by global hypomethylation and differential DNA methylation of adipogenesis genes

Data table header descriptions
VALUE Average Beta or normalized (provide the normalization method) Average Beta

Data table
cg00000029 0.062989617
cg00000108 0.933450653
cg00000109 0.68373606
cg00000165 0.185342409
cg00000236 0.88842594
cg00000289 0.484778213
cg00000292 0.374626915
cg00000321 0.070470242
cg00000363 0.078299796
cg00000622 0.021451218
cg00000658 0.836775953
cg00000714 0.054857189
cg00000721 0.970415955
cg00000734 0.040985306
cg00000769 0.06596926
cg00000807 0.85579076
cg00000884 0.885060226
cg00000905 0.03310367
cg00000924 0.35127907
cg00000948 0.955094785

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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